Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
UUGGCUGAGUGAGCAUCAC	19	NA	S25628346	click here

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	30	2.92
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	9	1.19
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	14	1.64
S0736	Solanum lycopersicum	Ailsa Craig	fruit, immature (17 days after anthesis)	1	0.22
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	57	4.2
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	32	13.38
S0715	Solanum lycopersicum	MicroTom	fruit , 5 days post breaker	7	7.16
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	24	6.04
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	43	12.19
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	35	8.95
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	105	50.58
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	20	16.61
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	33	18.71
S0708	Solanum lycopersicum	MicroTom	flower, open	4	1.23
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	45	11.81
S0373	Solanum lycopersicum	Heinz 1706	fruit	890	266.39
S0372	Solanum lycopersicum	Heinz 1706	flower	341	103.2
S0371	Solanum lycopersicum	Heinz 1706	leaf	899	270.91

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch12	1977864	1977759	-	CAGGUGCUCACUCAGCUAAU AGUUAUUAUUUAAGAAACUC AAUAAUAUUGGCAGCAAGGA GAAUGGUGACUUUCAGGAUG AUAACUAUUGGCUGAGUGAG CAUCAC	-50.60	miRNA*	structure
SL2.40ch12	1979509	1979404	-	GAGGUGCUCACUCAGCUAAU AGUUAUUGUUUAAGAAACUC AAUAAUAUUGGCAGCAAGGA GAAUGGUGACUUUCAGGAUG AUAACUAUUGGCUGAGUGAG CAUCAC	-49.70	miRNA*	structure