Tomato Functional Genomics Database (TFGD)

Tomato miRNA M00079

sequence	Length	miRNA family	sRNA ID	target
UGUCGCAGAUGACUUUCGC	19	NA	S24047117	click here

Digital expression

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	4	0.39
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	5	0.66
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	2	0.23
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	7	0.52
S0734	Solanum lycopersicum	IL8-3-1	seedlings, two-week-old	72	55.48
S0733	Solanum lycopersicum	IL8-3	seedlings, two-week-old	61	46.27
S0732	Solanum lycopersicum	IL8-2-1	seedlings, two-week-old	51	36.33
S0731	Solanum lycopersicum	IL8-2	seedlings, two-week-old	60	44.19
S0730	Solanum lycopersicum	IL8-1-3	seedlings, two-week-old	63	39.34
S0729	Solanum lycopersicum	IL8-1D	seedlings, two-week-old	83	52.87
S0728	Solanum lycopersicum	IL8-1-1	seedlings, two-week-old	55	36.25
S0727	Solanum lycopersicum	IL2-5	seedlings, two-week-old	46	28.12
S0726	Solanum lycopersicum	IL1-1	seedlings, two-week-old	62	37.11
S0725	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate3	252	245.88
S0724	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate2	373	217.75
S0723	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate1	211	206.98
S0722	Solanum lycopersicum x S. pennellii	M82 x LA716 (F1)	seedlings, two-week-old , replicate2	478	338.06
S0721	Solanum lycopersicum x S. pennellii	M82 x LA716 (F1)	seedlings, two-week-old , replicate1	110	119.75
S0720	Solanum pennellii	LA716	seedlings, two-week-old , replicate2	142	135.67
S0719	Solanum pennellii	LA716	seedlings, two-week-old , replicate1	32	92.44
S0718	Solanum lycopersicum	M82	seedlings, two-week-old , replicate2	55	38.32
S0717	Solanum lycopersicum	M82	seedlings, two-week-old , replicate1	7	9.34
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	1	0.42
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	18	4.53
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	2	0.57
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	22	5.63
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	54	26.01
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	8	6.65
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	8	4.54
S0708	Solanum lycopersicum	MicroTom	flower, open	11	3.39
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	31	8.14
S0373	Solanum lycopersicum	Heinz 1706	fruit	2	0.6
S0372	Solanum lycopersicum	Heinz 1706	flower	3	0.91
S0371	Solanum lycopersicum	Heinz 1706	leaf	9	2.71

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00079

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch08	53776411	53776495	+	UGUCGCAGAUGACUUUCGCC CAUUUAUAGAACCACACUUU CUUUAAUUUGAAUUCUAUGU GGUAGGACGAGAGUCAUCUG UGACA	-37.30	NA	structure
SL2.40ch08	53789929	53790013	+	UGUCGCAGAUGACUUUCGCC CAUUUAUGGAACCACACUUU CUUUAAUUUGAAUUCUAUGU GGUAGGACGAGAGUCAUCUG UGACA	-38.30	NA	structure
SL2.40ch12	6988968	6988874	-	UGUCGCAGAUGACUUUCGCC CUUCUAAGGAACCACACUUU CUGUAAAUCUAAUUAAUUUG AAUUCAAUGUGGCAGGACGA GAGUCAUCUGUGACA	-37.34	NA	structure