Tomato miRNA M00082

sequenceLengthmiRNA familysRNA IDtarget
CGGAGAGUAGAAGGCAAGAG20NA S14051923 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0735Solanum lycopersicumSunnyleaf , TSWV-infected40.3
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker22493.67
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker112114.53
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker644162.1
S0713Solanum lycopersicumMicroTom fruit , breaker stage16245.91
S0712Solanum lycopersicumMicroTom fruit , mature green20251.68
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter17885.74
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter9578.92
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter312176.9
S0708Solanum lycopersicumMicroTom flower, open6219.13
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming11329.67

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00082

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch0573319827332138+ CGGAGAGUAGAAGGCAAGAG
GAUCUAUUUCACUCAGAGCA
UUUAGCAUCUGUUUGGAGGA
AGAUGAAGGAGAAGACAUGU
UCUUUUUUUAAAAAAAAUGG
UUUCUUUGAACAGUUAAGAG
AAAAAGAAGAAUUUUUUUUU
GCCUUUUUAGCUUUUUG
-41.86NA structure