Tomato miRNA M00091

sequenceLengthmiRNA familysRNA IDtarget
GAGGUGCUCACUCAGCUAAUA21NA S16533448 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)171.66
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)14819.62
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)1172136.92
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)51.08
S0735Solanum lycopersicumSunnyleaf , TSWV-infected1098.04
S0373Solanum lycopersicumHeinz 1706fruit10.3
S0371Solanum lycopersicumHeinz 1706leaf10.3

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00091

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch1219795091979404- GAGGUGCUCACUCAGCUAAU
A
GUUAUUGUUUAAGAAACUC
AAUAAUAUUGGCAGCAAGGA
GAAUGGUGACUUUCAGGAUG
AUAACUAUUGGCUGAGUGAG
CAUCAC
-49.70miRNA* structure