Tomato miRNA M00092

sequenceLengthmiRNA familysRNA IDtarget
CAUGGCAGGAAGACAUGAGGC21NA S13318185 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)343.31
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)141.86
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)30.35
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)10.22
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 135104.03
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 5239.45
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 5438.47
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 10375.86
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 10666.19
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 10667.53
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 5636.91
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 5936.07
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 8148.49
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate36260.49
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate2172100.41
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate1134131.45
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate212689.11
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate12931.57
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate112.89
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate27652.94
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate1105140.12
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker72.93
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker33.07
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker164.03
S0713Solanum lycopersicumMicroTom fruit , breaker stage30.85
S0712Solanum lycopersicumMicroTom fruit , mature green164.09
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter8239.5
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter8570.61
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter5128.92
S0708Solanum lycopersicumMicroTom flower, open164.94
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming6416.8
S0372Solanum lycopersicumHeinz 1706flower30.91

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00092

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch0449075664907643+ CAUGGCAGGAAGACAUGAGG
C
AUUAGUAUGUAUAUUGUGU
AAAUUUUAAAUACUAAUGCC
UCAUGCCUUCCUGCCAUG
-48.40NA structure