Tomato miRNA M00093

sequenceLengthmiRNA familysRNA IDtarget
AUAAUGCUUGGAAUAUGCCCU21NA S09084492 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)37136.15
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)12216.17
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)37543.81
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)29663.74
S0735Solanum lycopersicumSunnyleaf , TSWV-infected131596.99
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker11.02
S0712Solanum lycopersicumMicroTom fruit , mature green30.77
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter31.7
S0708Solanum lycopersicumMicroTom flower, open51.54
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming82.1
S0373Solanum lycopersicumHeinz 1706fruit575172.11
S0372Solanum lycopersicumHeinz 1706flower24172.94
S0371Solanum lycopersicumHeinz 1706leaf570171.76

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00093

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch056064611060646323+ AGGGCAUAUGUCAAGUAUUA
UGGGAAAUGUUAUUGUAAUU
CACACGUUGAAUAUAUCUCA
UAAUGAAUGCAAUGUCAUAU
ACCAUCAACACUUGGAAACU
CAAAUUGAGGUUAAAUCUCG
GAGUGAUGAUGGUAUAUGAC
CUUGCAAUUCACUAUGAGAU
AAGUUCAACGUGUGAAUUGC
CAUAAGAUCUCCCAUAAUGC
UUGGAAUAUGCCCU
-123.70NA structure