Tomato Functional Genomics Database (TFGD)

Tomato miRNA M00095

sequence	Length	miRNA family	sRNA ID	target
UGGAAGAGGUGAUUGGAGAAA	21	NA	S23588766	click here

Digital expression

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	64	4.72
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	512	214.1
S0715	Solanum lycopersicum	MicroTom	fruit , 5 days post breaker	35	35.79
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	469	118.05
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	134	37.98
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	128	32.75
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	1	0.83
S0708	Solanum lycopersicum	MicroTom	flower, open	4	1.23
S0373	Solanum lycopersicum	Heinz 1706	fruit	9	2.69
S0372	Solanum lycopersicum	Heinz 1706	flower	4	1.21
S0371	Solanum lycopersicum	Heinz 1706	leaf	13	3.92

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00095

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch01	3116752	3116834	+	UCUCUCCAGUCACCUCAUCC GUAUUUCUCGAAUAGGUUGC UAAUUCAAGCAUUAGAGAAA UAUGGAAGAGGUGAUUGGAG AAA	-46.40	NA	structure