Tomato miRNA M00098
| sequence | Length | miRNA family | sRNA ID | target |
|---|
| CAGGUGCUCACUCAGCUAAUA | 21 | NA |
S13133510
| NA |
Digital expression
| Sample | No. raw reads | RPM |
|---|
| ID | Organism | Cultivar | Tissue |
|---|
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 60 | 5.85 | | S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 183 | 24.26 | | S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 1996 | 233.18 | | S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 25 | 5.38 | | S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 52 | 3.84 | | S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 1 | 0.26 | | S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 1 | 0.48 | | S0708 | Solanum lycopersicum | MicroTom | flower, open | 1 | 0.31 | | S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 2 | 0.6 | | S0372 | Solanum lycopersicum | Heinz 1706 | flower | 1 | 0.3 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00098
| genome hit of precursor | precursor |
|---|
| sequence ID | start | end | strand | sequence |
folding
energy | miRNA* | structure |
|---|
| SL2.40ch12 | 1977864 | 1977759 | - |
CAGGUGCUCACUCAGCUAAU
AGUUAUUAUUUAAGAAACUC
AAUAAUAUUGGCAGCAAGGA
GAAUGGUGACUUUCAGGAUG
AUAACUAUUGGCUGAGUGAG
CAUCAC | -50.60 | miRNA* |
structure |
|
