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Tomato miRNA M00102
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| ACGGUGAUAAUGGUAUUCUAA | 21 | NA | S05229019 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 12 | 1.17 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 52 | 6.89 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 75 | 8.76 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 3 | 0.65 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1628 | 120.08 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 2 | 2.05 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 1 | 0.28 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 2 | 0.51 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 1 | 0.83 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 2 | 0.62 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 527 | 157.74 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 167 | 50.54 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 989 | 298.03 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00102
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch11 | 36953054 | 36952891 | - | ACGGUGAUAAUGGUAUUCUA AUAUUGCUAAAGUUAGACAG AUUUACUGCCUUUUGUUAUU UCAGAUGCAGGAACACCAAU ACAAGAAGCAAUGAGCUUGC UUGGGCAUGUCAAAAGCCGU AAAUCCAUUCAAUUUUAGCA AUAUUGGAAUACCAUCAUCA CCGU | -70.41 | miRNA* | structure |
