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Tomato miRNA M00104
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UAGAUGUGCAUACUCAAAGUU | 21 | NA | S21066129 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 5 | 0.49 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 10 | 1.33 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 39 | 4.56 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1236 | 91.17 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 254 | 195.74 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 415 | 314.82 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 350 | 249.35 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 236 | 173.81 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 283 | 176.71 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 275 | 175.19 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 243 | 160.15 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 266 | 162.62 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 190 | 113.74 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 287 | 280.03 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 436 | 254.52 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 236 | 231.5 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 330 | 233.39 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 175 | 190.51 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 8 | 7.64 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 6 | 17.33 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 204 | 142.11 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 182 | 242.87 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 44 | 18.4 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 6 | 6.14 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 50 | 12.59 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 7 | 1.98 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 39 | 9.98 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 5 | 2.41 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 17 | 9.64 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 157 | 48.44 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 125 | 32.82 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 329 | 98.47 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 377 | 114.1 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 521 | 157 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00104
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch05 | 64733710 | 64733918 | + | AAUUUUGAGAGUGCAUAUCU AGACACCUCAUUUGAUCUUA AUAGCAACUAACACUCCAAC CCGUCCACACCAUGUAUGUG GACAUCCAAUGUUGACAUGA CACAUAAAUUUUGGAGGUGA CCAACUGAUCAUUUUGUAAG UUGGAGCGUUCAGUUGAAAC AGUGGAGAUGAGUUGAGGUC AAGGUGUCUAGAUGUGCAUA CUCAAAGUU | -82.50 | NA | structure |
| SL2.40ch06 | 36695091 | 36695273 | + | AACUUUGAGAGUGCACAUAG ACACCUCAACUUGCUCUCAA CUGGCAACUAGCACUCCAGC UCGUCUCCACUUUGCCUCGU AGACACCCAAUGCUGACAUG AAACAUAAAUUUUGGAGGUG UCUAGUUGAUGAACUGACAC AAUAGAGACAAGUUGAGGUG UCUAGAUGUGCAUACUCAAA GUU | -72.70 | NA | structure |
| SL2.40ch05 | 59811827 | 59812033 | + | AACUUUUGGGAUUGUACAUC UCAACACUUCAUCUUGGUUU UAACGUACAACUUAACACUC CACUCGUCCUCGCUAUAUCU CAUGGACACCUGAUGCUGAC ACGACACAUAAAUUUUGAAG GUUUCUAGAUGAUCAUUUUG UAAGUUGGAGUGCUCAAUUG ACACAAUGGUGACAAGUUGA GGUGUCUAGAUGUGCAUACU CAAAGUU | -54.89 | NA | structure |
| SL2.40ch03 | 15593977 | 15594183 | + | AACUUUGAGUAUACACAUCU AGACACCUCAACUCGUCUCU ACUGUGUUAGUUGAAUAUUU CAACUUACAAAAUAAUCAUC UUGUCACCUAUAAAAUUUAU GUGUCAUAUCAGUGUCGGGU GUCCACGAGACACUGUAGAG ACGAAGGGGAAGGUUUAGUU GUCUGUUGAGACCAAGUUGA UUUGUUUAGAUGUGCAUACU CAAAGUU | -75.70 | NA | structure |
| SL2.40ch05 | 4081962 | 4081755 | - | AACUUUGAGGAGUGCACAUA UAGACACCUCAAUUUGGUCU CAACUGGCAACAGAAUACUC CAACUCGUCCCCAGUGUGUC UCGUAGACAGCAGAUGCUGA UGUGGCACAUAAACUUUGGA GGUGUCUAGAUGAACAUUCU UUAAGUUGGAAUGUGCAGCU GAUAUAGUGGAGAAGAGUUG AAGUUUCUAGAUGUGCAUAC UCAAAGUU | -77.10 | NA | structure |
| SL2.40ch04 | 1080942 | 1080820 | - | AGCUUCGAGAGUGAACAUCU ACACACCUCAAUUGGACACU CCAACUCGUCCCUAGUGUGA UGCUGACAUGGCAUAUAAAU UUUGGAGACGAGUUGAGGUG UCUAGAUGUGCAUACUCAAA GUU | -51.40 | NA | structure |
| SL2.40ch09 | 5248594 | 5248404 | - | AACUUUGAGAGUGCACAUCU AGAUACCUCAACUAGACCCU CCAACUCGUGCCCGCUGUGU CUUGUAGACACUUGACAUUA AAGUAGCAGAUAAACUUUAG AGGUGUCUCAAUGAUGAUUU UGUAGAUGUUGGAGUAUUUA ACUAACACAUUGGAGACGAG UUGAGGUGUCUAGAUGUGCA UACUCAAAGUU | -82.30 | NA | structure |
| SL2.40ch11 | 50996822 | 50996618 | - | AACUUUAAGUAUGCACACCU AGACACCUAAAUGUGGUCUC AACUGACAACUAAAUGCUCC AACUCGUCUCCACUGUGUCU UGUGGACAUAUGACGUUGAU GCGUCACAUAAUUUUGGAGG UGUCUAAAUGAUCAUUUGUA UGUCGGAGUGUUCACCUGAC ACAGUGGAGACGAGUUGAGG UGUCUAGAUGUGCAUACUCA AAGUU | -103.90 | NA | structure |
