Tomato miRNA M00105

sequenceLengthmiRNA familysRNA IDtarget
CUAUGAGAUAAGUUCAACGUG21NA S14429049 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)3017293.99
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)1419188.08
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)1705199.18
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)673144.93
S0735Solanum lycopersicumSunnyleaf , TSWV-infected5137378.9
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker52.09
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker22.05
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker143.52
S0713Solanum lycopersicumMicroTom fruit , breaker stage41.13
S0712Solanum lycopersicumMicroTom fruit , mature green112.81
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter20.96
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter21.66
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter147.94
S0708Solanum lycopersicumMicroTom flower, open288.64
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming4110.76
S0373Solanum lycopersicumHeinz 1706fruit417124.81
S0372Solanum lycopersicumHeinz 1706flower17753.57
S0371Solanum lycopersicumHeinz 1706leaf419126.26

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00105

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch056064615260646281+ CACGUUGAAUAUAUCUCAUA
AUGAAUGCAAUGUCAUAUAC
CAUCAACACUUGGAAACUCA
AAUUGAGGUUAAAUCUCGGA
GUGAUGAUGGUAUAUGACCU
UGCAAUUCACUAUGAGAUAA
GUUCAACGUG
-67.40NA structure