Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
UUCACUGUGUGAGAUGGUAAU	21	NA	S24968120	click here

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	21	2.05
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	3	0.4
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	18	2.1
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	3860	284.71
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	1	0.42
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	1	0.25
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	6	1.54
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	2	0.96
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	1	0.57
S0708	Solanum lycopersicum	MicroTom	flower, open	1	0.31
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	2	0.53
S0373	Solanum lycopersicum	Heinz 1706	fruit	872	261
S0372	Solanum lycopersicum	Heinz 1706	flower	316	95.63
S0371	Solanum lycopersicum	Heinz 1706	leaf	1369	412.54

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch11	36953076	36952869	-	UUCACUGUGUGAGAUGGUAA UAACGGUGAUAAUGGUAUUC UAAUAUUGCUAAAGUUAGAC AGAUUUACUGCCUUUUGUUA UUUCAGAUGCAGGAACACCA AUACAAGAAGCAAUGAGCUU GCUUGGGCAUGUCAAAAGCC GUAAAUCCAUUCAAUUUUAG CAAUAUUGGAAUACCAUCAU CACCGUUAUUACCACCUGGC ACAGUGAA	-103.61	miRNA*	structure