Tomato miRNA M00107
Digital expression
Sample | No. raw reads | RPM |
ID | Organism | Cultivar | Tissue |
S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 2 | 0.15 | S0708 | Solanum lycopersicum | MicroTom | flower, open | 1 | 0.31 | S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 1 | 0.3 | S0372 | Solanum lycopersicum | Heinz 1706 | flower | 1431 | 433.08 | S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 1 | 0.3 |
Hits on known miRNAs
No hits on known miRNAs were found |
Precursor of miRNA M00107
genome hit of precursor | precursor |
sequence ID | start | end | strand | sequence |
folding energy | miRNA* | structure |
SL2.40ch03 | 61794559 | 61794734 | + |
AGGAAACUGUUUAGUCCAAC
CCAAGGUGGGGUAUUGGAAC
UGAUCUUUGCUGCUGAAUCA
UUGGCUCAUGAGCAUGUCAA
AGAAGAUGAUUGAACAUUCU
GGACAUGUUCUUGCUCCAAU
GAUGCAGGAGCUGAGCUCGG
UUUUUCACCGCCUUUUCUUG
GACUGAAGGGUUUCCU | -84.80 | NA |
structure |
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