Tomato miRNA M00108

sequenceLengthmiRNA familysRNA IDtarget
UGUGAGAUGGUAAUAACGGUG21NA S24082662 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)302.92
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)719.41
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)728.41
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)61.29
S0735Solanum lycopersicumSunnyleaf , TSWV-infected88064.91
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker10744.74
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker2323.52
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker14636.75
S0713Solanum lycopersicumMicroTom fruit , breaker stage4412.47
S0712Solanum lycopersicumMicroTom fruit , mature green11429.17
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter31.7
S0708Solanum lycopersicumMicroTom flower, open11635.79
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming328.4
S0373Solanum lycopersicumHeinz 1706fruit355106.26
S0372Solanum lycopersicumHeinz 1706flower13039.34
S0371Solanum lycopersicumHeinz 1706leaf1528460.45

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00108

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch113695306936952876- UGUGAGAUGGUAAUAACGGU
G
AUAAUGGUAUUCUAAUAUU
GCUAAAGUUAGACAGAUUUA
CUGCCUUUUGUUAUUUCAGA
UGCAGGAACACCAAUACAAG
AAGCAAUGAGCUUGCUUGGG
CAUGUCAAAAGCCGUAAAUC
CAUUCAAUUUUAGCAAUAUU
GGAAUACCAUCAUCACCGUU
AUUACCACCUGGCA
-89.61miRNA* structure