Tomato miRNA M00109

sequenceLengthmiRNA familysRNA IDtarget
UUUUCAGUAGACGUUGUGAAU21NA S26599310 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)171.66
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)151.99
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)30.35
S0735Solanum lycopersicumSunnyleaf , TSWV-infected11443844.03
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker93.76
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker51.26
S0373Solanum lycopersicumHeinz 1706fruit15446.09
S0372Solanum lycopersicumHeinz 1706flower123.63
S0371Solanum lycopersicumHeinz 1706leaf319.34

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00109

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch085613264856132786+ UUUUCAGUAGACGUUGUGAA
U
AAUUGAUAAAUACAGGUAU
ACAGAGGUCUUAAUAUAGUC
AGAACCUAGAAAUAUGUGUA
ACUAGAUUCAGACCUUUGUA
CACUUGUAUUCUGUUGCUAU
UCACAAUCUCUGCUGAAAA
-58.20NA structure