Tomato miRNA M00110

sequenceLengthmiRNA familysRNA IDtarget
UCUUGGAUUUUAUCGGAGUUA21NA S22826028 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)20.19
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)10.13
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)30.35
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)40.86
S0735Solanum lycopersicumSunnyleaf , TSWV-infected12600929.37
S0712Solanum lycopersicumMicroTom fruit , mature green51.28
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter31.7
S0708Solanum lycopersicumMicroTom flower, open319.56
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming164.2
S0373Solanum lycopersicumHeinz 1706fruit10832.33
S0372Solanum lycopersicumHeinz 1706flower618187.03
S0371Solanum lycopersicumHeinz 1706leaf7422.3

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00110

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch085930578559305677- UAACCCCGAUAAAAUCUAAG
UUUCCAAAGGCUUUAAUGUU
ACUCGUCAAGUAAAUGGUGA
UGAGUUGGUAAUGUUAAGGU
UUUUGGAAUCUUGGAUUUUA
UCGGAGUUA
-52.00NA structure