Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
UCUUGGAUUUUAUCGGAGUUA	21	NA	S22826028	click here

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	2	0.19
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	1	0.13
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	3	0.35
S0736	Solanum lycopersicum	Ailsa Craig	fruit, immature (17 days after anthesis)	4	0.86
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	12600	929.37
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	5	1.28
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	3	1.7
S0708	Solanum lycopersicum	MicroTom	flower, open	31	9.56
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	16	4.2
S0373	Solanum lycopersicum	Heinz 1706	fruit	108	32.33
S0372	Solanum lycopersicum	Heinz 1706	flower	618	187.03
S0371	Solanum lycopersicum	Heinz 1706	leaf	74	22.3

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch08	59305785	59305677	-	UAACCCCGAUAAAAUCUAAG UUUCCAAAGGCUUUAAUGUU ACUCGUCAAGUAAAUGGUGA UGAGUUGGUAAUGUUAAGGU UUUUGGAAUCUUGGAUUUUA UCGGAGUUA	-52.00	NA	structure