Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
UGAGAUGGUAAUAACGGUGAU	21	NA	S23224349	NA

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	17	1.66
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	88	11.66
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	161	18.81
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	7993	589.56
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	900	376.35
S0715	Solanum lycopersicum	MicroTom	fruit , 5 days post breaker	89	91.01
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	1276	321.18
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	301	85.31
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	676	172.95
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	4	1.93
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	12	6.8
S0708	Solanum lycopersicum	MicroTom	flower, open	333	102.75
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	82	21.53
S0373	Solanum lycopersicum	Heinz 1706	fruit	4145	1240.66
S0372	Solanum lycopersicum	Heinz 1706	flower	1053	318.68
S0371	Solanum lycopersicum	Heinz 1706	leaf	12447	3750.8

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch11	36953067	36952878	-	UGAGAUGGUAAUAACGGUGA UAAUGGUAUUCUAAUAUUGC UAAAGUUAGACAGAUUUACU GCCUUUUGUUAUUUCAGAUG CAGGAACACCAAUACAAGAA GCAAUGAGCUUGCUUGGGCA UGUCAAAAGCCGUAAAUCCA UUCAAUUUUAGCAAUAUUGG AAUACCAUCAUCACCGUUAU UACCACCUGG	-85.61	miRNA*	structure