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Tomato miRNA M00122
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| CGGUGACAGAAGAGAGUGAGCA | 22 | NA | S14127807 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1 | 0.07 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 6 | 4.62 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 2 | 1.52 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 2 | 1.42 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 1 | 0.74 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 1 | 0.62 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 1 | 0.64 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 1 | 0.61 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 3 | 1.8 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 24 | 23.42 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 4 | 2.34 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 42 | 45.72 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 30 | 28.66 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 60 | 173.32 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 3 | 2.09 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 5 | 6.67 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00122
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch08 | 49276197 | 49276289 | + | CGGUGACAGAAGAGAGUGAG CACACAUGGUGUUUUCUAGC AUGAUGUUUUACAUGCUUGA AACUAUGUGUGCUCACUGCU CUAUCUGUCACCC | -57.90 | miRNA* | structure |
| SL2.40ch08 | 49122971 | 49122872 | - | CGGUGACAGAAGAGAGUGAG CACACAUGGCGUUUUCUGGC AUGAUGUUUAUAUAUAUAUA UGCUUGAAACUAUGUGUGCU CACUGCUCUAUCUGUCACCU | -57.30 | miRNA* | structure |
| SL2.40ch08 | 49143881 | 49143790 | - | CGGUGACAGAAGAGAGUGAG CACAUAUGGUCUUUUCAAGC AUGAUGUUUACAUGCUUGAA GCUAUGCGUGCUCACUUCUC UAUCUGUCACCC | -55.50 | NA | structure |
