Tomato miRNA M00122

sequenceLengthmiRNA familysRNA IDtarget
CGGUGACAGAAGAGAGUGAGCA22NA S14127807 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0735Solanum lycopersicumSunnyleaf , TSWV-infected10.07
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 64.62
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 21.52
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 21.42
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 10.74
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 10.62
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 10.64
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 10.61
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 31.8
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate32423.42
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate242.34
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate14245.72
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate23028.66
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate160173.32
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate232.09
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate156.67

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00122

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch084927619749276289+ CGGUGACAGAAGAGAGUGAG
CA
CACAUGGUGUUUUCUAGC
AUGAUGUUUUACAUGCUUGA
AACUAUGUGUGCUCACUGCU
CUAUCUGUCACCC
-57.90miRNA* structure
SL2.40ch084912297149122872- CGGUGACAGAAGAGAGUGAG
CA
CACAUGGCGUUUUCUGGC
AUGAUGUUUAUAUAUAUAUA
UGCUUGAAACUAUGUGUGCU
CACUGCUCUAUCUGUCACCU
-57.30miRNA* structure
SL2.40ch084914388149143790- CGGUGACAGAAGAGAGUGAG
CA
CAUAUGGUCUUUUCAAGC
AUGAUGUUUACAUGCUUGAA
GCUAUGCGUGCUCACUUCUC
UAUCUGUCACCC
-55.50NA structure