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Tomato miRNA M00124
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AAUACAACUAUAGCCAAGACAA | 22 | NA | S03299510 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 250 | 24.36 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 417 | 55.27 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 118 | 13.79 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 4 | 0.86 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 2229 | 164.41 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 2 | 2.05 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 10 | 2.52 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 8 | 2.05 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 2 | 0.96 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 3 | 1.7 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 13 | 4.01 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 6 | 1.58 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 425 | 127.21 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 261 | 78.99 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 611 | 184.12 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00124
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch01 | 832354 | 832559 | + | AAUACAACUAUAGCCAAGAC AAUGCUUCAUUAUAAGUGCA UAACUUUUCACUUUAUUGUU UGAGCAUUGUGUUGAUUUCU CUAAACUUGUUUUUCGUUGA ACAAGAUUGUUUUUUCAUAU ACUCAUGGAAAGCAACACCG UGCUCAGAAGUUAGAGUGAA AUGUUAUGCAUUUGUGAUUA UAUAUUUUCUUGGCUAGAGU UGUAUU | -89.30 | NA | structure |
