Tomato miRNA M00127

sequenceLengthmiRNA familysRNA IDtarget
UAACUUCGUCUAGCUCGCCUUC22NA S20441305 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)999.65
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)455.96
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)9410.98
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)1296279.08
S0735Solanum lycopersicumSunnyleaf , TSWV-infected44332.68
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker31.25
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker22.05
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker143.52
S0713Solanum lycopersicumMicroTom fruit , breaker stage30.85
S0712Solanum lycopersicumMicroTom fruit , mature green102.56
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter20.96
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter32.49
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter126.8
S0708Solanum lycopersicumMicroTom flower, open41.23
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming61.58
S0373Solanum lycopersicumHeinz 1706fruit500149.66
S0372Solanum lycopersicumHeinz 1706flower18957.2
S0371Solanum lycopersicumHeinz 1706leaf8826.52

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00127

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch1017098091709940+ UAACUUCGUCUAGCUCGCCU
UC
UAACUUACUCUGGACUUU
UACUCAUUAAAAAUUAUCGU
AACCACCUCUGCACCACUAC
AUUAAUAACUGAAAUGUCAG
UAGUUAGUUAGAAGGGGAGA
UAGAUGAAGUUA
-43.93miRNA* structure