Tomato miRNA M00128

sequenceLengthmiRNA familysRNA IDtarget
UGGCAGGAAGACAUGAGGCAUU22NA S23737564 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)20.23
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)10.22
S0735Solanum lycopersicumSunnyleaf , TSWV-infected20.15
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 289222.71
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 137103.93
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 13898.32
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 177130.36
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 317197.94
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 344219.14
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 301198.37
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 351214.58
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 414247.83
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate32726.34
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate210863.05
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate14443.16
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate28761.53
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate11819.59
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate2279194.36
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate1194258.88
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker8937.22
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker2121.47
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker11929.95
S0713Solanum lycopersicumMicroTom fruit , breaker stage13538.26
S0712Solanum lycopersicumMicroTom fruit , mature green27269.59
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter335161.37
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter258214.33
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter375212.63
S0708Solanum lycopersicumMicroTom flower, open528162.91
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming1101289.04
S0373Solanum lycopersicumHeinz 1706fruit20.6
S0372Solanum lycopersicumHeinz 1706flower175.14
S0371Solanum lycopersicumHeinz 1706leaf20.6

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00128

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy		miRNA*structure
SL2.40ch0449075684907641+ UGGCAGGAAGACAUGAGGCA
UUAGUAUGUAUAUUGUGUAA
AUUUUAAAUACUAAUGCCUC
AUGCCUUCCUGCCA		-44.80NA structure