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Tomato miRNA M00129
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UCUCAGUCGGAAGAGGGGGAAG | 22 | NA | S22616278 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 5 | 0.49 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 10 | 1.33 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 30 | 3.5 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 5 | 1.08 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 2960 | 218.33 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 5 | 2.09 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 4 | 1.01 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 2 | 0.51 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 2 | 0.62 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 1 | 0.26 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 286 | 85.6 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 314 | 95.03 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 976 | 294.11 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00129
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch06 | 32482731 | 32482864 | + | CAUCCUCCUCUUCCGACUGA GAAUUGCAAAGGUAAAGUGA AAGCGACUAAUGCUAAGGAG GAAGUUUUGCACAUAACCUU AGCAUUAGUCGCUUUCACUU UUCCUUUGCAAUUCUCAGUC GGAAGAGGGGGAAG | -100.57 | NA | structure |
