Tomato miRNA M00130
| sequence | Length | miRNA family | sRNA ID | target |
|---|
| CCGACUGAGAAUUGCAAAGGUA | 22 | NA |
S13622368
| NA |
Digital expression
| Sample | No. raw reads | RPM |
|---|
| ID | Organism | Cultivar | Tissue |
|---|
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 5 | 0.49 | | S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 5 | 0.66 | | S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 63 | 7.36 | | S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 9 | 1.94 | | S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 4085 | 301.31 | | S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 2 | 0.84 | | S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 113 | 33.82 | | S0372 | Solanum lycopersicum | Heinz 1706 | flower | 103 | 31.17 | | S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 182 | 54.84 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00130
| genome hit of precursor | precursor |
|---|
| sequence ID | start | end | strand | sequence |
folding
energy | miRNA* | structure |
|---|
| SL2.40ch06 | 32482743 | 32482852 | + |
CCGACUGAGAAUUGCAAAGG
UAAAGUGAAAGCGACUAAUG
CUAAGGAGGAAGUUUUGCAC
AUAACCUUAGCAUUAGUCGC
UUUCACUUUUCCUUUGCAAU
UCUCAGUCGG | -77.47 | miRNA* |
structure |
|
