Tomato miRNA M00132
sequence | Length | miRNA family | sRNA ID | target |
UUUUCAGUAGACGUUGUGAAUA | 22 | NA |
S26599311
| NA |
Digital expression
Sample | No. raw reads | RPM |
ID | Organism | Cultivar | Tissue |
S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 5 | 0.49 | S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 4 | 0.53 | S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 2 | 0.23 | S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 3 | 0.65 | S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 4953 | 365.33 | S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 1 | 0.42 | S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 2 | 0.51 | S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 2 | 1.13 | S0708 | Solanum lycopersicum | MicroTom | flower, open | 1 | 0.31 | S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 78 | 23.35 | S0372 | Solanum lycopersicum | Heinz 1706 | flower | 9 | 2.72 | S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 23 | 6.93 |
Hits on known miRNAs
No hits on known miRNAs were found |
Precursor of miRNA M00132
genome hit of precursor | precursor |
sequence ID | start | end | strand | sequence |
folding energy | miRNA* | structure |
SL2.40ch08 | 56132648 | 56132786 | + |
UUUUCAGUAGACGUUGUGAA
UAAUUGAUAAAUACAGGUAU
ACAGAGGUCUUAAUAUAGUC
AGAACCUAGAAAUAUGUGUA
ACUAGAUUCAGACCUUUGUA
CACUUGUAUUCUGUUGCUAU
UCACAAUCUCUGCUGAAAA | -58.20 | NA |
structure |
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