Tomato miRNA M00132

sequenceLengthmiRNA familysRNA IDtarget
UUUUCAGUAGACGUUGUGAAUA22NA S26599311 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)50.49
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)40.53
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)20.23
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)30.65
S0735Solanum lycopersicumSunnyleaf , TSWV-infected4953365.33
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker10.42
S0712Solanum lycopersicumMicroTom fruit , mature green20.51
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter21.13
S0708Solanum lycopersicumMicroTom flower, open10.31
S0373Solanum lycopersicumHeinz 1706fruit7823.35
S0372Solanum lycopersicumHeinz 1706flower92.72
S0371Solanum lycopersicumHeinz 1706leaf236.93

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00132

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch085613264856132786+ UUUUCAGUAGACGUUGUGAA
UA
AUUGAUAAAUACAGGUAU
ACAGAGGUCUUAAUAUAGUC
AGAACCUAGAAAUAUGUGUA
ACUAGAUUCAGACCUUUGUA
CACUUGUAUUCUGUUGCUAU
UCACAAUCUCUGCUGAAAA
-58.20NA structure