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Tomato miRNA M00135
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AAGGAAGAACAAUAGAGAGUACU | 23 | NA | S02708629 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 23 | 2.69 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 14 | 3.01 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 104 | 7.67 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 1 | 0.26 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 1 | 0.57 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 6 | 1.85 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 6 | 1.58 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 165 | 49.39 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 196 | 59.32 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 333 | 100.35 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00135
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch03 | 12576112 | 12575974 | - | AGUACUCUCUCUAUUGUUCU UCCUUUUUUUUUACCUAUUU AGAGUAAUUCGAAUUGGUAG AGUCUCGUGGUGAUAAUGUG UUAUAAAAUAAACAACUUAA CAAAACUAAAGUAAAAAAGG AAGAACAAUAGAGAGUACU | -47.60 | NA | structure |
