Tomato miRNA M00136

sequenceLengthmiRNA familysRNA IDtarget
AUGAUCAUUAGCGGCAUUUAAUU23NA S10952602 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)10.1
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)10.13
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)50.58
S0735Solanum lycopersicumSunnyleaf , TSWV-infected40.3
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 7255.48
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 5440.96
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 5438.47
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 3223.57
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 6540.59
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 6138.86
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 3523.07
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 7646.46
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 6337.71
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate3111108.3
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate2172100.41
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate1111108.88
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate213595.48
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate17278.38
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate25653.51
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate11852
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate25840.41
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate12634.7
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker83.35
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker246.04
S0713Solanum lycopersicumMicroTom fruit , breaker stage123.4
S0712Solanum lycopersicumMicroTom fruit , mature green194.86
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter2110.12
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter1814.95
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter2111.91
S0708Solanum lycopersicumMicroTom flower, open5015.43
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming348.93
S0372Solanum lycopersicumHeinz 1706flower20.61

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00136

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch064171431441714496+ AUGAUCAUUAGCGGCAUUUA
AUU
UUUAAUUGUCGCUAAAA
UAUAAAUUUUUAGCGGUAAU
UGUCACUCUUUGUAUAUGUC
CCUAAAGCCUUUAGCGACAU
UGGUUCUAAUGAUCUUUAAC
UAAUGCCGGUAAAGACUUUA
UCACUCUUUAUUAACGUCAA
UAUUUAAUGCCGCUAAAAGU
UAU
-48.80NA structure
SL2.40ch0525309222531086+ AUGAUCAUUAGCGGCAUUUA
AUU
CUUAAUUAUUGCUAAAU
AUGUGUCACUUUUUGUAUAU
GUUCCUAAAGCUUUUAGCGA
CAUUGAUUCUAAUGACACUU
GACUAAUGCCGGCAAAAACU
UUAACACUCUUUAUUAGUGU
CAAUAUUUAAUGCCGCUAAA
AUUAU
-34.21NA structure
SL2.40ch0740203284020509+ AUGAUCAUUAGCGGCAUUUA
AUU
CUUAAUUGCCGCUAAAU
AUGUAUUUUUAGCGGCAAUU
GUCACUGUUUGUAUAUGUCG
CUAAUGCCUUUAGCGACAUU
GGUUCUAAUGGCACUUAAGU
AAUGCCGGUAAAGACUUUAA
CACUCUUUAUUAGUGUCAAU
AUUUAAUGCCGCUAAAAGUU
AU
-61.00NA structure