Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
AAAGUGAGACGAACAAAUUGAAU	23	NA	S01089747	click here

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	3	0.29
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	5	0.66
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	5	0.58
S0736	Solanum lycopersicum	Ailsa Craig	fruit, immature (17 days after anthesis)	2	0.43
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	39	2.88
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	18	7.53
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	41	10.32
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	12	3.4
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	56	14.33
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	88	42.39
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	58	48.18
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	214	121.34
S0708	Solanum lycopersicum	MicroTom	flower, open	13	4.01
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	43	11.29
S0373	Solanum lycopersicum	Heinz 1706	fruit	24	7.18
S0372	Solanum lycopersicum	Heinz 1706	flower	26	7.87
S0371	Solanum lycopersicum	Heinz 1706	leaf	6	1.81

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch01	831473	831534	+	GUUCAAUUUGUUUGCCCUAC UUUACUUUUAAAGUAAAGUA AAGUGAGACGAACAAAUUGA AU	-26.40	miRNA*	structure