Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
UUGGCUGAGUGAGCAUCACGGAA	23	NA	S25628350	NA

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	20	1.48
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	1	0.25
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	4	1.13
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	2	0.51
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	2	0.96
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	1	0.83
S0708	Solanum lycopersicum	MicroTom	flower, open	8	2.47
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	2	0.53
S0373	Solanum lycopersicum	Heinz 1706	fruit	390	116.73
S0372	Solanum lycopersicum	Heinz 1706	flower	130	39.34
S0371	Solanum lycopersicum	Heinz 1706	leaf	423	127.47

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch12	1977868	1977755	-	UUCUCAGGUGCUCACUCAGC UAAUAGUUAUUAUUUAAGAA ACUCAAUAAUAUUGGCAGCA AGGAGAAUGGUGACUUUCAG GAUGAUAACUAUUGGCUGAG UGAGCAUCACGGAA	-51.10	NA	structure