Tomato miRNA M00151

sequenceLengthmiRNA familysRNA IDtarget
GUUGACGGCGUUAGAUUGAUAUA23NA S19943155 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0735Solanum lycopersicumSunnyleaf , TSWV-infected241.77
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 453349.09
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 298226.06
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 258183.81
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 321236.41
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 643401.49
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 333212.14
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 405266.92
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 418255.54
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 386231.06
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate3268261.49
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate2515300.64
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate1204200.11
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate2380268.75
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate1496539.95
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate2674643.98
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate13931135.27
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate2580404.05
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate1584779.31
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker19983.21
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker4343.97
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker18546.57
S0713Solanum lycopersicumMicroTom fruit , breaker stage26073.69
S0712Solanum lycopersicumMicroTom fruit , mature green29675.73
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter4421.19
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter3125.75
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter169.07
S0708Solanum lycopersicumMicroTom flower, open10030.85
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming17746.47
S0373Solanum lycopersicumHeinz 1706fruit20.6
S0371Solanum lycopersicumHeinz 1706leaf10.3

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00151

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch0814993581499484+ GUUGACGGCGUUAGAUUGAU
AUA
UGUUACUCAUAGUAACA
UUUUACUCCUAACACGUUAC
UCAAAAUAACGUUUUAGGAA
UAAAAUAUUACUCACAGUAA
CGUAUAUCAACCUAACGCUG
UUAGUUU
-58.10NA structure
SL2.40ch104363170543631860+ GUUGACGGCGUUAGAUUGAU
AUA
AGUUACUCACAAUAAUG
UUUUACUCCUAAAACGUUAG
UCACAGUAACGUUUUAAGAG
UAAAAUAUUACUCAAAAUAA
CGUUUUAGGAGUAAAAUGUU
ACUUACAGUAACGUAUAUUA
ACCUAACGCUGUUAAU
-68.80NA structure
SL2.40ch024204775142047844+ GUUGACGGCGUUAGAUUGAU
AUA
CGUUACUCAAAAUGACU
UUUUAGAAGUAAAGCGUUAC
UUACAGUUACGUAUAUCAAC
CUAACGCUAUUAAU
-33.50NA structure
SL2.40ch022950755829507434- GUUGACGGCGUUAGAUUGAU
AUA
CGUUACUCACAGUAACG
UUUUACUCGUGAAACGUUAU
UGUGAGUAACGUCUUACUCU
UAAAACGUUACUCAGAGUAA
CGUAUAUCAACCUAACGCUG
UUAGU
-69.30NA structure