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Tomato miRNA M00151
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| GUUGACGGCGUUAGAUUGAUAUA | 23 | NA | S19943155 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 24 | 1.77 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 453 | 349.09 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 298 | 226.06 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 258 | 183.81 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 321 | 236.41 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 643 | 401.49 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 333 | 212.14 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 405 | 266.92 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 418 | 255.54 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 386 | 231.06 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 268 | 261.49 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 515 | 300.64 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 204 | 200.11 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 380 | 268.75 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 496 | 539.95 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 674 | 643.98 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 393 | 1135.27 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 580 | 404.05 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 584 | 779.31 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 199 | 83.21 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 43 | 43.97 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 185 | 46.57 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 260 | 73.69 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 296 | 75.73 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 44 | 21.19 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 31 | 25.75 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 16 | 9.07 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 100 | 30.85 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 177 | 46.47 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 2 | 0.6 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 1 | 0.3 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00151
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch08 | 1499358 | 1499484 | + | GUUGACGGCGUUAGAUUGAU AUAUGUUACUCAUAGUAACA UUUUACUCCUAACACGUUAC UCAAAAUAACGUUUUAGGAA UAAAAUAUUACUCACAGUAA CGUAUAUCAACCUAACGCUG UUAGUUU | -58.10 | NA | structure |
| SL2.40ch10 | 43631705 | 43631860 | + | GUUGACGGCGUUAGAUUGAU AUAAGUUACUCACAAUAAUG UUUUACUCCUAAAACGUUAG UCACAGUAACGUUUUAAGAG UAAAAUAUUACUCAAAAUAA CGUUUUAGGAGUAAAAUGUU ACUUACAGUAACGUAUAUUA ACCUAACGCUGUUAAU | -68.80 | NA | structure |
| SL2.40ch02 | 42047751 | 42047844 | + | GUUGACGGCGUUAGAUUGAU AUACGUUACUCAAAAUGACU UUUUAGAAGUAAAGCGUUAC UUACAGUUACGUAUAUCAAC CUAACGCUAUUAAU | -33.50 | NA | structure |
| SL2.40ch02 | 29507558 | 29507434 | - | GUUGACGGCGUUAGAUUGAU AUACGUUACUCACAGUAACG UUUUACUCGUGAAACGUUAU UGUGAGUAACGUCUUACUCU UAAAACGUUACUCAGAGUAA CGUAUAUCAACCUAACGCUG UUAGU | -69.30 | NA | structure |
