Tomato miRNA M00152

sequenceLengthmiRNA familysRNA IDtarget
AGGGAUUGUAGGCAGAGAGAUGG23NA S07846780 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)10.1
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)20.27
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)10.12
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)30.65
S0735Solanum lycopersicumSunnyleaf , TSWV-infected1158.48
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 10782.46
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 2720.48
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 7049.87
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 12289.85
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 8653.7
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 5736.31
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 8958.66
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 14789.87
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 11568.84
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate31211.71
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate22011.68
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate11110.79
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate23021.22
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate13841.37
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate22321.98
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate11646.22
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate26746.67
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate177102.75
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker16468.58
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker140143.16
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker27669.47
S0713Solanum lycopersicumMicroTom fruit , breaker stage687194.71
S0712Solanum lycopersicumMicroTom fruit , mature green398101.82
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter711342.49
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter13671135.62
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter26491501.99
S0708Solanum lycopersicumMicroTom flower, open24876.52
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming623163.55
S0373Solanum lycopersicumHeinz 1706fruit10.3

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00152

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch024548333245483501+ CCAUCUUCCUGGCUAUAUUC
CCUUGUAAAGUGUCCUUCUU
GUCCGCAUUUGUAGCAUCCC
GCUCCUCCUCCACCGCCUCC
UUGGCUACAUUCCCUUGUGA
AAGAAGGAAGGGGCUGCUAC
AAAUGUGGGGAAGAAGGGCA
UUUUGGAAGGGAUUGUAGGC
AGAGAGAUGG
-98.80NA structure
SL2.40ch024548702945487198+ CCAUCUUCCUGGCUAUAUUC
CCUUGUAAAGUGUCCCUCUU
CGCCGCAUUUGUAGCAUCCC
GCUAUUCCUCCACCGCCUCC
CUGGCUACAUUCCCUUGCGA
AAGAAGGAGGGGGCUGCUAC
AAAUGUGGGGAAGAAGGGCA
UUUUGGAAGGGAUUGUAGGC
AGAGAGAUGG
-98.30NA structure