Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
UUGAAUGUUGGGGAACGAACGUCU	24	NA	S25335887	NA

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	55	5.36
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	36	4.77
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	864	100.93
S0736	Solanum lycopersicum	Ailsa Craig	fruit, immature (17 days after anthesis)	120	25.84
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	65	4.79
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	13	5.44
S0715	Solanum lycopersicum	MicroTom	fruit , 5 days post breaker	2	2.05
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	21	5.29
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	32	9.07
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	19	4.86
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	11	5.3
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	14	11.63
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	10	5.67
S0708	Solanum lycopersicum	MicroTom	flower, open	21	6.48
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	44	11.55
S0373	Solanum lycopersicum	Heinz 1706	fruit	68	20.35
S0372	Solanum lycopersicum	Heinz 1706	flower	28	8.47
S0371	Solanum lycopersicum	Heinz 1706	leaf	15	4.52

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch09	3057927	3057788	-	UUGAAUGUUGGGGAACGAAC GUCUAAGGUUUGGGUCAACG AUCUCAAUGUUGAUGCGUCC GCUUGUUGUUGAUGCUGCUC CAAAAGGUUCAACAUUGGGA UUUUAGCCCAAACAUCAGAC GUCCCUUCCCCAUCGUUCAA	-67.10	NA	structure