Tomato miRNA M00153

sequenceLengthmiRNA familysRNA IDtarget
UUGAAUGUUGGGGAACGAACGUCU24NA S25335887 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)555.36
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)364.77
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)864100.93
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)12025.84
S0735Solanum lycopersicumSunnyleaf , TSWV-infected654.79
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker135.44
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker22.05
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker215.29
S0713Solanum lycopersicumMicroTom fruit , breaker stage329.07
S0712Solanum lycopersicumMicroTom fruit , mature green194.86
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter115.3
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter1411.63
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter105.67
S0708Solanum lycopersicumMicroTom flower, open216.48
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming4411.55
S0373Solanum lycopersicumHeinz 1706fruit6820.35
S0372Solanum lycopersicumHeinz 1706flower288.47
S0371Solanum lycopersicumHeinz 1706leaf154.52

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00153

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch0930579273057788- UUGAAUGUUGGGGAACGAAC
GUCU
AAGGUUUGGGUCAACG
AUCUCAAUGUUGAUGCGUCC
GCUUGUUGUUGAUGCUGCUC
CAAAAGGUUCAACAUUGGGA
UUUUAGCCCAAACAUCAGAC
GUCCCUUCCCCAUCGUUCAA
-67.10NA structure