Tomato miRNA M00154

sequenceLengthmiRNA familysRNA IDtarget
AUAAAAUUGAACAAUUAGACGGAC24NA S08777387 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)50.49
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)30.4
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)10.12
S0735Solanum lycopersicumSunnyleaf , TSWV-infected100.74
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker3514.64
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker99.2
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker328.05
S0713Solanum lycopersicumMicroTom fruit , breaker stage10630.04
S0712Solanum lycopersicumMicroTom fruit , mature green14537.1
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter15474.18
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter9276.43
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter14481.65
S0708Solanum lycopersicumMicroTom flower, open23371.89
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming398104.49
S0373Solanum lycopersicumHeinz 1706fruit51.5
S0372Solanum lycopersicumHeinz 1706flower61.82
S0371Solanum lycopersicumHeinz 1706leaf41.21

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00154

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch064374386243743962+ AUAAAAUUGAACAAUUAGAC
GGAC
AUGACAUAAUAACGUA
GGAAGUCAUAUAGACACAAA
AUUUUCAUGUAUGACGAAUG
UGUCUAUCUGUUCAAUUUUA
U
-26.90NA structure