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Tomato miRNA M00156
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGGUGUCUAGAUGUGCAUACUCAA | 24 | NA | S08090164 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 32 | 3.74 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 27 | 1.99 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 12 | 9.25 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 8 | 6.07 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 32 | 22.8 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 28 | 20.62 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 34 | 21.23 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 10 | 6.37 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 9 | 5.93 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 13 | 7.95 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 13 | 7.78 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 49 | 47.81 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 114 | 66.55 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 45 | 44.14 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 153 | 108.21 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 30 | 32.66 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 83 | 79.3 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 9 | 26 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 19 | 13.24 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 4 | 5.34 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 5 | 1.42 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 2 | 0.96 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 1 | 0.57 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 10 | 3.09 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 5 | 1.31 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 7 | 2.1 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 9 | 2.72 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 8 | 2.41 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00156
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch06 | 36695095 | 36695269 | + | UUGAGAGUGCACAUAGACAC CUCAACUUGCUCUCAACUGG CAACUAGCACUCCAGCUCGU CUCCACUUUGCCUCGUAGAC ACCCAAUGCUGACAUGAAAC AUAAAUUUUGGAGGUGUCUA GUUGAUGAACUGACACAAUA GAGACAAGUUGAGGUGUCUA GAUGUGCAUACUCAA | -66.70 | NA | structure |
| SL2.40ch05 | 59811831 | 59812029 | + | UUUGGGAUUGUACAUCUCAA CACUUCAUCUUGGUUUUAAC GUACAACUUAACACUCCACU CGUCCUCGCUAUAUCUCAUG GACACCUGAUGCUGACACGA CACAUAAAUUUUGAAGGUUU CUAGAUGAUCAUUUUGUAAG UUGGAGUGCUCAAUUGACAC AAUGGUGACAAGUUGAGGUG UCUAGAUGUGCAUACUCAA | -52.79 | NA | structure |
| SL2.40ch05 | 64733714 | 64733914 | + | UUGAGAGUGCAUAUCUAGAC ACCUCAUUUGAUCUUAAUAG CAACUAACACUCCAACCCGU CCACACCAUGUAUGUGGACA UCCAAUGUUGACAUGACACA UAAAUUUUGGAGGUGACCAA CUGAUCAUUUUGUAAGUUGG AGCGUUCAGUUGAAACAGUG GAGAUGAGUUGAGGUCAAGG UGUCUAGAUGUGCAUACUCA A | -78.80 | NA | structure |
| SL2.40ch11 | 50996818 | 50996622 | - | UUAAGUAUGCACACCUAGAC ACCUAAAUGUGGUCUCAACU GACAACUAAAUGCUCCAACU CGUCUCCACUGUGUCUUGUG GACAUAUGACGUUGAUGCGU CACAUAAUUUUGGAGGUGUC UAAAUGAUCAUUUGUAUGUC GGAGUGUUCACCUGACACAG UGGAGACGAGUUGAGGUGUC UAGAUGUGCAUACUCAA | -99.00 | NA | structure |
| SL2.40ch04 | 1080938 | 1080824 | - | UCGAGAGUGAACAUCUACAC ACCUCAAUUGGACACUCCAA CUCGUCCCUAGUGUGAUGCU GACAUGGCAUAUAAAUUUUG GAGACGAGUUGAGGUGUCUA GAUGUGCAUACUCAA | -48.90 | NA | structure |
| SL2.40ch09 | 5248590 | 5248408 | - | UUGAGAGUGCACAUCUAGAU ACCUCAACUAGACCCUCCAA CUCGUGCCCGCUGUGUCUUG UAGACACUUGACAUUAAAGU AGCAGAUAAACUUUAGAGGU GUCUCAAUGAUGAUUUUGUA GAUGUUGGAGUAUUUAACUA ACACAUUGGAGACGAGUUGA GGUGUCUAGAUGUGCAUACU CAA | -76.30 | NA | structure |
