Tomato miRNA M00159

sequenceLengthmiRNA familysRNA IDtarget
AGUUGACGGCGUUAAAUUGAUAUA24NA S08637541 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)10.13
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)10.12
S0735Solanum lycopersicumSunnyleaf , TSWV-infected20.15
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker10644.33
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker2525.56
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker7117.87
S0713Solanum lycopersicumMicroTom fruit , breaker stage15543.93
S0712Solanum lycopersicumMicroTom fruit , mature green18346.82
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter5928.42
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter4436.55
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter11162.94
S0708Solanum lycopersicumMicroTom flower, open28688.24
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming454119.19
S0372Solanum lycopersicumHeinz 1706flower10.3

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00159

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch064323407943234236+ AGUUGACGGCGUUAAAUUGA
UAUA
CGUUACUCACAGUAAU
GUUUUACUCCUAAAGUGUUA
CUCACGGUAACGUUUUAGGA
GUAAAACGUUACUCAAAAUA
ACGUUUUAGGAGUAAAACGU
UACUUACAGUAACGUAUAUC
AAUCUAACGCUGUUAGUU
-82.40NA structure
SL2.40ch035770853857708381- AGUUGACGGCGUUAAAUUGA
UAUA
CGUUACUCACAGUAAU
GUUUUACUCCUAAAGUAUUA
CUCACAAUAACUUUUUAGGA
GUAAAACGUUACUCAAAAUA
ACGUUUUACUCCUAAAACGU
UACUUACAGUAACGUAUAUC
AACCUAACGCUGUUAGUU
-69.60NA structure