Tomato miRNA M00160

sequenceLengthmiRNA familysRNA IDtarget
GUUGACGGCGUUAGAUUGAUAUAC24NA S19943157 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0735Solanum lycopersicumSunnyleaf , TSWV-infected110.81
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 2720.81
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 1410.62
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 2215.67
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 4130.2
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 5735.59
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 2717.2
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 2013.18
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 3923.84
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 3118.56
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate32221.47
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate23922.77
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate187.85
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate23323.34
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate14751.16
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate26864.97
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate142121.33
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate27753.64
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate13749.37
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker20.84
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker55.11
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker92.27
S0713Solanum lycopersicumMicroTom fruit , breaker stage143.97
S0712Solanum lycopersicumMicroTom fruit , mature green225.63
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter52.41
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter32.49
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter21.13
S0708Solanum lycopersicumMicroTom flower, open123.7
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming3910.24

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00160

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch024204775142047844+ GUUGACGGCGUUAGAUUGAU
AUAC
GUUACUCAAAAUGACU
UUUUAGAAGUAAAGCGUUAC
UUACAGUUACGUAUAUCAAC
CUAACGCUAUUAAU
-33.50NA structure
SL2.40ch022950755829507434- GUUGACGGCGUUAGAUUGAU
AUAC
GUUACUCACAGUAACG
UUUUACUCGUGAAACGUUAU
UGUGAGUAACGUCUUACUCU
UAAAACGUUACUCAGAGUAA
CGUAUAUCAACCUAACGCUG
UUAGU
-69.30NA structure