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Tomato miRNA M00160
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| GUUGACGGCGUUAGAUUGAUAUAC | 24 | NA | S19943157 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 11 | 0.81 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 27 | 20.81 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 14 | 10.62 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 22 | 15.67 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 41 | 30.2 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 57 | 35.59 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 27 | 17.2 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 20 | 13.18 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 39 | 23.84 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 31 | 18.56 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 22 | 21.47 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 39 | 22.77 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 8 | 7.85 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 33 | 23.34 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 47 | 51.16 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 68 | 64.97 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 42 | 121.33 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 77 | 53.64 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 37 | 49.37 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 2 | 0.84 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 5 | 5.11 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 9 | 2.27 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 14 | 3.97 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 22 | 5.63 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 5 | 2.41 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 3 | 2.49 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 2 | 1.13 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 12 | 3.7 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 39 | 10.24 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00160
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch02 | 42047751 | 42047844 | + | GUUGACGGCGUUAGAUUGAU AUACGUUACUCAAAAUGACU UUUUAGAAGUAAAGCGUUAC UUACAGUUACGUAUAUCAAC CUAACGCUAUUAAU | -33.50 | NA | structure |
| SL2.40ch02 | 29507558 | 29507434 | - | GUUGACGGCGUUAGAUUGAU AUACGUUACUCACAGUAACG UUUUACUCGUGAAACGUUAU UGUGAGUAACGUCUUACUCU UAAAACGUUACUCAGAGUAA CGUAUAUCAACCUAACGCUG UUAGU | -69.30 | NA | structure |
