Tomato miRNA M00162

sequenceLengthmiRNA familysRNA IDtarget
ACAUGGCAGGAAGACAUGAGGCAU24NA S04774071 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)10.12
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 11387.08
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 4634.9
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 4229.92
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 8764.07
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 11068.68
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 10667.53
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 13186.34
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 14991.09
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 213127.5
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate32120.49
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate212572.97
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate12827.47
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate26646.68
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate11516.33
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate210.96
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate24430.65
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate13344.04
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker31.25
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker1212.27
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker143.52
S0713Solanum lycopersicumMicroTom fruit , breaker stage92.55
S0712Solanum lycopersicumMicroTom fruit , mature green276.91
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter7435.65
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter6554
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter9453.3
S0708Solanum lycopersicumMicroTom flower, open3410.49
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming29878.23
S0372Solanum lycopersicumHeinz 1706flower20.61

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00162

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch0449075654907644+ ACAUGGCAGGAAGACAUGAG
GCAU
UAGUAUGUAUAUUGUG
UAAAUUUUAAAUACUAAUGC
CUCAUGCCUUCCUGCCAUGU
-50.10NA structure