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Tomato miRNA M00163
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AAGAUAGACUUGUUUGACUCUUGA | 24 | NA | S02465474 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 28 | 2.07 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 18 | 13.87 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 13 | 9.86 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 3 | 2.14 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 3 | 2.21 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 8 | 5 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 30 | 19.11 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 28 | 18.45 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 13 | 7.95 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 20 | 11.97 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 77 | 75.13 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 227 | 132.52 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 108 | 105.94 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 137 | 96.89 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 47 | 51.16 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 70 | 66.88 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 5 | 14.44 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 23 | 16.02 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 6 | 8.01 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 1 | 0.42 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 1 | 0.28 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 2 | 0.51 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 11 | 5.3 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 3 | 2.49 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 13 | 7.37 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 25 | 7.71 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 65 | 17.06 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 2 | 0.61 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00163
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch03 | 23984834 | 23984651 | - | UUAAGAGUCAAACAAUUUAA GUUUGAUCGAAAAUUUGCGG AUGGAAUCUUUAAUUUUUUU AAAUGAAAUUUAUAUAUUUA UAAACUGCAUAAAAGGUAUU AUGAGUCAUAAUAAUGGAUA AUUCUAAUUGUUUAAAAGAU CUAUGAAUUAUUUACGGGCA AAGAUAGACUUGUUUGACUC UUGA | -39.60 | NA | structure |
