Tomato miRNA M00166

sequenceLengthmiRNA familysRNA IDtarget
ACAUGGACAAGUAAAUAGGGACGG24NA S04771485 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)80.78
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)10.12
S0735Solanum lycopersicumSunnyleaf , TSWV-infected60.44
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker6728.02
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker137140.09
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker10827.18
S0713Solanum lycopersicumMicroTom fruit , breaker stage33494.66
S0712Solanum lycopersicumMicroTom fruit , mature green14637.35
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter2411.56
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter119.14
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter95.1
S0708Solanum lycopersicumMicroTom flower, open288.64
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming369.45

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00166

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch094027361940273488- ACAUGGACAAGUAAAUAGGG
ACGG
GGAGUAUUUAAUAUUU
AUUUUGAGAUUAAAUUAAUU
CAGAUUAACAUAACAAAAGU
CCAGUCUUAAAAACGCUAAU
UAAUUCCUCUAUUCCUAAUU
UAUUUGUUCAGU
-30.30NA structure