Tomato miRNA M00170

sequenceLengthmiRNA familysRNA IDtarget
AUAUGACGGCAGGAACAUCAAUGU24NA S09954219 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)30.29
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)30.4
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)20.23
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)20.43
S0735Solanum lycopersicumSunnyleaf , TSWV-infected90.66
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 205157.98
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 179135.79
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 194138.21
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 221162.76
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 176109.9
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 194123.59
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 250164.76
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 254155.28
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 16196.38
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate31514.64
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate25431.52
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate110.98
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate24129
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate12628.3
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate212083.6
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate177102.75
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker4117.14
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker102104.3
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker5012.59
S0713Solanum lycopersicumMicroTom fruit , breaker stage14541.1
S0712Solanum lycopersicumMicroTom fruit , mature green5313.56
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter2612.52
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter75.82
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter5128.92
S0708Solanum lycopersicumMicroTom flower, open8526.23
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming15039.38
S0372Solanum lycopersicumHeinz 1706flower10.3
S0371Solanum lycopersicumHeinz 1706leaf30.9

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00170

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch063908817639088284+ ACAUUGGUGUCCCUGUCGUU
CGUAAAUUAAAGCAUACAUG
CCCUUUCACUCUAACAAAGU
GGCAUGGGCACCAAAUGUCC
CAAAAAUAUGACGGCAGGAA
CAUCAAUGU
-41.56NA structure