Tomato miRNA M00174

sequenceLengthmiRNA familysRNA IDtarget
UGGACGGCGAGGACAUGAGUGAAC24NA S23636861 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)10.13
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 241185.72
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 173131.24
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 142101.17
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 140103.11
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 14389.29
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 157100.02
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 153100.83
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 200122.27
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 290173.6
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate31413.66
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate23118.1
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate12019.62
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate21812.73
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate15256.61
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate26562.1
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate11852
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate213191.26
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate1124165.47
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker93.76
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker1515.34
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker307.55
S0713Solanum lycopersicumMicroTom fruit , breaker stage4312.19
S0712Solanum lycopersicumMicroTom fruit , mature green5012.79
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter6330.35
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter3529.08
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter5229.48
S0708Solanum lycopersicumMicroTom flower, open185.55
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming8622.58

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00174

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch023363894333638831- GUUCACUCAUGUUUUCGCCA
UCCAACUUUUGGUUCAUGUA
UGUCCAACAUGGCAACUAAC
GCCUAUAAAGGCAUAUUUGC
ACCAAAAGUUGGACGGCGAG
GACAUGAGUGAAC
-67.40NA structure