Tomato miRNA M00175

sequenceLengthmiRNA familysRNA IDtarget
AGAGACGCACUUAUACUAUACUAA24NA S06454254 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)20.27
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)10.12
S0735Solanum lycopersicumSunnyleaf , TSWV-infected50.37
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 2317.72
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 129.1
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 2014.25
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 1712.52
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 2314.36
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 2616.56
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 85.27
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 3622.01
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 2716.16
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate33332.2
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate27342.62
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate13130.41
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate23323.34
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate14548.99
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate24038.22
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate165187.77
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate23121.6
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate13141.37
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker72.93
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker256.29
S0713Solanum lycopersicumMicroTom fruit , breaker stage82.27
S0712Solanum lycopersicumMicroTom fruit , mature green174.35
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter94.34
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter86.65
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter158.51
S0708Solanum lycopersicumMicroTom flower, open6820.98
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming8221.53
S0373Solanum lycopersicumHeinz 1706fruit10.3
S0372Solanum lycopersicumHeinz 1706flower20.61

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00175

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy		miRNA*structure
SL2.40ch1234785273478746+ AGAGACGCACUUAUACUAUA
CUAAGGUCCUAUUAUCCCCU
GAACUUAUUUUAUAAGUAAU
UUUCUAUCCCUUUUCGGCCU
ACGUGGCACUAGCUUGAAAA
UAAAAGUCAAUCAGCGUUGG
ACCCACAAGAUAGUGCCACG
UAGGUCAAAAAGGGAUAGAA
AAUUAUUAAUAAAAUAAGUU
CAGGGAUAAUAGCACCUUAG
UAUAGUAUAAGUGUGUCUCU
-139.06miRNA* structure
SL2.40ch017214114972141370+ AGAGACGCACUUAUACUAUA
CUAAGGUCUUAUUACCCUCC
UGAACUUAUUUUAUAAGUAA
UUUUCUAUCCCUUUUUAGUU
UACGUGACACUAGUUUGAAA
AAAAAAGUCAACCAUCGUUG
GACCCACAAGAUAGUGCCAC
GUAGGUCGAAAAGGGGUAAA
AAAUUCUUAAUAAAAUAAGU
UCAGGGGGUAAUAGGACCUU
AGUAUAGUAUAAGUGUGUCU
CU		-125.36miRNA* structure
SL2.40ch0959937185993940+ AGAGACGCACUUAUACUAUA
CUAAAGUCCUAUUACCCCAC
UGAACUUAUUUUAUUAAUAA
UUUUUACCCCUUUUCGACCU
ACGUUGUACUAUCUUGUGAG
CUCAACGAUGGUUGACUUUU
UUUUUCAAACUAGUGCCACG
UAGGCUAAAAAAGGGGUAGA
AAAUUACUUAUAAAAUAAGU
UUAGGGGGGUAAUAGGAUCU
UAGUAUAGCAUAAGUGUGUC
UCU		-116.20NA structure
SL2.40ch085591659055916812+ AGAGACGCACUUAUACUAUA
CUAAGGUCCUAUUACCCCCU
GAACUUAUUUUAUAAGUAAU
UCUCUACCCCUUUUUAGCUU
ACGCGACACUAGUUUGAAAC
AAAAAAAUCAACCAUCGUUG
GGCCCACAAGAUAGUGCCAC
GUGGGCUAAAAAGGGGUAAA
AAAUUAUUAAUAAUAUAAGU
UCAUGGGGGUAAUAGGACCU
UAGUAUAGUAUAAGUGUGUC
UCU		-129.79miRNA* structure
SL2.40ch061810110918101330+ AGAGACGCACUUAUACUAUA
CUAAGGUCCUAUUAUCCCCC
UGAACUUAUUUUAUAAGUAA
UUUUGUACCCCUUUUCAGCC
UAUGUGGCACUAUCUUGAAA
AAAAAGUCAACCAACAUCGG
GCCCACAAGAUAGUGCCACG
UAGGCCUUACAAGGAUAGAA
AAUUCUUAAUAAUUCAAGUU
CAGGGGAGUAAUAGGACGUU
AAUAUAGUAUAACUGUGUCU
CU		-108.10NA structure
SL2.40ch032872081528720597- AGAGACGCACUUAUACUAUA
CUAAGGUCAUAUUACCCCCU
GAACUUAUUUUAUAAGUAAU
UUUCUACAACUUUUAGAAUA
CGUGGCACUAGUUUGAAAAA
AAAGUCAACCAACGUUGGGC
CCACAAGAUAGUGUCACGUA
GGACGAAAAGGGGUAGAAAA
UUAUUAAUAAAAUAAGUUCA
GGGGGUAAUAGGACCUUAGU
AUAGUAUAAGUGUGUCUCU		-128.04miRNA* structure
SL2.40ch0933395023339280- AGAGACGCACUUAUACUAUA
CUAAGGUCCUAUUACCCCUG
AAAUUAUUUUAUUAAUAAUU
UUUUACCCCUUUUCNGCCUA
CNUGGCACUAUCUUGUGGGU
CCAACGAUGGUUGACUUUUU
UUUUCAAACUAGUGCCACGU
AGGCAAAAAAAAAAGGGAUA
AAAAAUUACUUAUAAAAUAA
GUUCAGGGGUAAUAGGACCU
UAUUAUAGUAUAAGUGUGUC
CCU		-115.70NA structure
SL2.40ch033879912238798902- AGAGACGCACUUAUACUAUA
CUAAGGUCCUAUUACUAUCC
UAAACUUAUUUUUUAAAUAA
UUUCCUACCCCUUUUUGGCC
UACGUGACACUAUCUUGUGG
GCCAAACGUUGGUUGACUUU
UUUUUCAAGCUAGUGUCACG
UGGGCCAAAAGGGGUAGAAA
AUUACUUAUAAGAUAAGUUU
UGGGAGAUAAUAGGACCUUA
GUAUAGUAUAAGUGUGUUUC
U		-130.30NA structure
SL2.40ch075441635954416139- AGAGACGCACUUAUACUAUA
CUAAGAUCCUAUUACCCCCU
AAACUUAUUUUAUCAAUAAU
UUUCAACCCCUUUUCGGCAU
ACGUGGCACUAUGUAGUGGG
UCUAAGGUUGGUUGAAUUUU
UUUCCAAACUAAUGCCACAU
AGGCCGAAAAGGGGUAGAAA
AAUAAUUAUAAAAUAAGUUC
AGGGGGGUAAUAGGACCUUA
GUAUAGUAUAAAUGUGUCUC
U		-116.80miRNA* structure
SL2.40ch034119162141191403- AGAGACGCACUUAUACUAUA
CUAAGGUCCUAUUACCCCUG
AACUUAUUUUGUAAAUAAUU
UACUACCCCUUUUUGACCUA
CGUGGCACUAUCUUGUGGGU
CCACGCGAGUUGACAUUUUU
UUUCAAGAUAGGGCCACGUA
GGAUGAAAAGGGAUAGAAAA
UUAUUUAUAAAAUAAGUUUA
GGAGGUAAUAGGACCUUAGU
AUGAUAUAAGUGUGUCUCU		-136.70NA structure
SL2.40ch045397204853971826- AGAGACGCACUUAUACUAUA
CUAAAGUCCUAUUACCCCCC
UGAACUUAUUUUAUUAAUAA
UUUUUUACCCCUUUUCGACC
UACGUGGCACUAUCUUGUGG
GCCCAACGAUGAUUGACUUU
UUUUCUCAAACUCGUGCCAC
AUAGGCAAAAAAGGGGUAGA
AAAUUACUUAUAAAAUAAGU
UCAGGGGGGUAAUAGGACCU
UAGAAUAAUAUAAGUGUGUC
UCU		-121.40NA structure