Tomato miRNA M00176

sequenceLengthmiRNA familysRNA IDtarget
AUGGCAGAGACAAUACCUGAGUAU24NA S11184187 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)10.12
S0735Solanum lycopersicumSunnyleaf , TSWV-infected130.96
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 3426.2
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 2015.17
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 64.27
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 2115.47
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 1811.24
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 159.56
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 95.93
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 2213.45
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 105.99
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate3125121.96
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate2255148.86
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate1117114.77
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate2185130.84
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate15660.96
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate2126120.39
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate166190.66
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate242.79
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate145.34
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker123.02
S0713Solanum lycopersicumMicroTom fruit , breaker stage195.39
S0712Solanum lycopersicumMicroTom fruit , mature green235.88
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter188.67
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter97.48
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter116.24
S0708Solanum lycopersicumMicroTom flower, open5015.43
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming5714.96
S0373Solanum lycopersicumHeinz 1706fruit30.9
S0372Solanum lycopersicumHeinz 1706flower51.51

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00176

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch024923875249238938+ AUAUUCAGGUAUUGUCUCUG
CCAUUGGCGGCCAUUCGCUC
UUUUAAUCCCCUCUUAUUGG
CUUGCUGCCUCAAGGGAAUG
UAAAGGAGCCAUAGGUCACG
GGUUCGAUUCUCCCUUGAGG
CUGCGAGCCAAUAAGAGGGG
AUUAAAAGAGCGAAUGGCCG
CCCAUGGCAGAGACAAUACC
UGAGUAU
-154.30NA structure