Tomato miRNA M00177

sequenceLengthmiRNA familysRNA IDtarget
AGAAUAGUUGGCUCAUUAGGUUAA24NA S06121010 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)10.13
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)414.79
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)61.29
S0735Solanum lycopersicumSunnyleaf , TSWV-infected695.09
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 21.54
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 10.76
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 74.99
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 75.16
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 21.25
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 63.82
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 63.95
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 74.28
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 74.19
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate34240.98
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate24123.93
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate165.89
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate2107.07
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate15559.87
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate2208198.73
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate11028.89
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate242.79
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker20.84
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker30.76
S0712Solanum lycopersicumMicroTom fruit , mature green41.02
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter20.96
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter54.15
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter31.7
S0708Solanum lycopersicumMicroTom flower, open7222.22
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming133.41
S0373Solanum lycopersicumHeinz 1706fruit164.79
S0372Solanum lycopersicumHeinz 1706flower288.47
S0371Solanum lycopersicumHeinz 1706leaf267.83

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00177

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch036351543163515513+ UUAGCUUAAUGAACAAGCUA
UUCUUUAAUUAGGGAAUCGA
AAACCAAUUUCCUAUUUAAA
GAAUAGUUGGCUCAUUAGGU
UAA
-35.30NA structure