Tomato miRNA M00179
| sequence | Length | miRNA family | sRNA ID | target |
|---|
| UUGGCAUAAGUUUGUGAAAGCCGG | 24 | NA |
S25617520
| NA |
Digital expression
| Sample | No. raw reads | RPM |
|---|
| ID | Organism | Cultivar | Tissue |
|---|
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 82 | 7.99 | | S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 79 | 10.47 | | S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 73 | 8.53 | | S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 3 | 0.65 | | S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 181 | 13.35 | | S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 3 | 0.85 | | S0708 | Solanum lycopersicum | MicroTom | flower, open | 2 | 0.62 | | S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 5 | 1.31 | | S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 695 | 208.02 | | S0372 | Solanum lycopersicum | Heinz 1706 | flower | 188 | 56.9 | | S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 71 | 21.4 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00179
| genome hit of precursor | precursor |
|---|
| sequence ID | start | end | strand | sequence |
folding
energy | miRNA* | structure |
|---|
| SL2.40ch08 | 3341867 | 3341760 | - |
UUGGCAUAAGUUUGUGAAAG
CCGGAGAUUUAGGAGUAAAG
UACAAUUAUUUUCGCAAAUA
AUUGUAUCUUUUGCUCUUAA
ACCUUUAGCUUUAACAAAUU
UGUGCCAA | -52.00 | NA |
structure |
|
