Tomato miRNA M00181

sequenceLengthmiRNA familysRNA IDtarget
AGUGAAGGGCAUAUAUACUCUAGU24NA S08410667 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)50.49
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)141.86
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)20.23
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)20.43
S0735Solanum lycopersicumSunnyleaf , TSWV-infected120.89
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 207159.52
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 259196.48
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 251178.82
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 300220.94
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 302188.57
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 234149.07
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 243160.15
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 311190.13
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 263157.44
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate3138134.65
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate2192112.08
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate12726.49
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate29365.77
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate192100.15
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate25047.77
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate12983.77
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate2173120.52
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate1154205.5
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker3615.05
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker5714.35
S0713Solanum lycopersicumMicroTom fruit , breaker stage4211.9
S0712Solanum lycopersicumMicroTom fruit , mature green5113.05
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter115.3
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter2621.6
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter169.07
S0708Solanum lycopersicumMicroTom flower, open7824.07
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming8622.58
S0373Solanum lycopersicumHeinz 1706fruit10.3
S0372Solanum lycopersicumHeinz 1706flower30.91
S0371Solanum lycopersicumHeinz 1706leaf20.6

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00181

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch1152824005282542+ ACUAGAGCAUGUAUACCCUU
UAUACUAACGGACAUUCACG
UGUCACAAUCUUAUCCACUG
AUUCGACAUUUAUCGAUGGA
UAAUAUUGCGCCACGUAUCU
CUAUUUAGUCUUCCGUUAGA
GUGAAGGGCAUAUAUACUCU
AGU
-56.00NA structure
SL2.40ch063891389338913751- ACUAGAGCAUAUAUAUCUUU
UAUACUAACAAGCAUACACG
UGCCAUAAUCUUAUCCACCG
AUUCGAUAUUUAUCGAUUGA
UAAAAUUGUGUCACGUGUCC
GUAUUUAGUCUUCCGUUAGA
GUGAAGGGCAUAUAUACUCU
AGU
-46.30NA structure