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Tomato miRNA M00187
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AAAAUGAUCAUUAGCGGCAUUUAA | 24 | NA | S00474604 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 1 | 0.22 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 76 | 5.61 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 111 | 85.54 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 78 | 59.17 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 46 | 32.77 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 37 | 27.25 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 46 | 28.72 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 111 | 70.71 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 88 | 58 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 108 | 66.03 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 101 | 60.46 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 171 | 166.84 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 430 | 251.02 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 197 | 193.24 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 575 | 406.66 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 115 | 125.19 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 133 | 127.08 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 18 | 52 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 82 | 57.12 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 22 | 29.36 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 10 | 4.18 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 2 | 2.05 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 7 | 1.76 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 23 | 6.52 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 15 | 3.84 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 52 | 25.05 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 48 | 39.88 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 49 | 27.78 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 70 | 21.6 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 79 | 20.74 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 4 | 1.2 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 4 | 1.21 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 4 | 1.21 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00187
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch05 | 2530919 | 2531089 | + | AAAAUGAUCAUUAGCGGCAU UUAAUUCUUAAUUAUUGCUA AAUAUGUGUCACUUUUUGUA UAUGUUCCUAAAGCUUUUAG CGACAUUGAUUCUAAUGACA CUUGACUAAUGCCGGCAAAA ACUUUAACACUCUUUAUUAG UGUCAAUAUUUAAUGCCGCU AAAAUUAUUUU | -36.71 | NA | structure |
| SL2.40ch07 | 4020325 | 4020512 | + | AAAAUGAUCAUUAGCGGCAU UUAAUUCUUAAUUGCCGCUA AAUAUGUAUUUUUAGCGGCA AUUGUCACUGUUUGUAUAUG UCGCUAAUGCCUUUAGCGAC AUUGGUUCUAAUGGCACUUA AGUAAUGCCGGUAAAGACUU UAACACUCUUUAUUAGUGUC AAUAUUUAAUGCCGCUAAAA GUUAUUUU | -63.70 | NA | structure |
| SL2.40ch06 | 41714311 | 41714499 | + | AAAAUGAUCAUUAGCGGCAU UUAAUUUUUAAUUGUCGCUA AAAUAUAAAUUUUUAGCGGU AAUUGUCACUCUUUGUAUAU GUCCCUAAAGCCUUUAGCGA CAUUGGUUCUAAUGAUCUUU AACUAAUGCCGGUAAAGACU UUAUCACUCUUUAUUAACGU CAAUAUUUAAUGCCGCUAAA AGUUAUUUU | -51.50 | NA | structure |
