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Tomato miRNA M00189
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AAGGGAUUGUAGGCAGAGAGAUGG | 24 | NA | S02840588 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 1 | 0.12 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 3 | 0.65 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 24 | 1.77 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 163 | 125.61 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 23 | 17.45 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 93 | 66.26 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 122 | 89.85 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 139 | 86.79 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 65 | 41.41 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 93 | 61.29 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 164 | 100.26 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 174 | 104.16 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 37 | 36.1 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 34 | 19.85 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 17 | 16.68 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 50 | 35.36 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 62 | 67.49 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 35 | 33.44 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 21 | 60.66 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 21 | 14.63 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 72 | 96.08 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 15 | 6.27 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 5 | 5.11 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 24 | 6.04 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 77 | 21.82 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 48 | 12.28 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 187 | 90.08 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 351 | 291.59 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 738 | 418.45 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 75 | 23.14 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 172 | 45.15 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00189
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch02 | 45487029 | 45487198 | + | CCAUCUUCCUGGCUAUAUUC CCUUGUAAAGUGUCCCUCUU CGCCGCAUUUGUAGCAUCCC GCUAUUCCUCCACCGCCUCC CUGGCUACAUUCCCUUGCGA AAGAAGGAGGGGGCUGCUAC AAAUGUGGGGAAGAAGGGCA UUUUGGAAGGGAUUGUAGGC AGAGAGAUGG | -98.30 | NA | structure |
| SL2.40ch02 | 45483332 | 45483501 | + | CCAUCUUCCUGGCUAUAUUC CCUUGUAAAGUGUCCUUCUU GUCCGCAUUUGUAGCAUCCC GCUCCUCCUCCACCGCCUCC UUGGCUACAUUCCCUUGUGA AAGAAGGAAGGGGCUGCUAC AAAUGUGGGGAAGAAGGGCA UUUUGGAAGGGAUUGUAGGC AGAGAGAUGG | -98.80 | NA | structure |
