Tomato miRNA M00198

sequenceLengthmiRNA familysRNA IDtarget
AAAGUGAGACGAACAAAUUGAAUC24NA S01089748 click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739Solanum lycopersicumAilsa Craigfruit, red ripe (52 days after anthesis)47546.29
S0738Solanum lycopersicumAilsa Craigfruit, breaker (42 days after anthesis)53170.38
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)13215.42
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)6012.92
S0735Solanum lycopersicumSunnyleaf , TSWV-infected8398619.44
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker246102.87
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker3737.83
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker998251.2
S0713Solanum lycopersicumMicroTom fruit , breaker stage774219.37
S0712Solanum lycopersicumMicroTom fruit , mature green2247574.87
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter939452.31
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter439364.69
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter21361211.12
S0708Solanum lycopersicumMicroTom flower, open2134658.43
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming3240850.59
S0373Solanum lycopersicumHeinz 1706fruit3308990.13
S0372Solanum lycopersicumHeinz 1706flower44981361.28
S0371Solanum lycopersicumHeinz 1706leaf2806845.56

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00198

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy
miRNA*structure
SL2.40ch01831472831535+ GGUUCAAUUUGUUUGCCCUA
CUUUACUUUUAAAGUAAAGU
AAAGUGAGACGAACAAAUUG
AAUC
-28.40NA structure