Tomato miRNA M00199

sequenceLengthmiRNA familysRNA IDtarget
AGCUGACGGCGUUAGAUUGAUAUA24NA S07306443 NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0737Solanum lycopersicumAilsa Craigfruit, mature green (39 days after anthesis)20.23
S0736Solanum lycopersicumAilsa Craigfruit, immature (17 days after anthesis)20.43
S0735Solanum lycopersicumSunnyleaf , TSWV-infected151.11
S0734Solanum lycopersicumIL8-3-1seedlings, two-week-old 416320.58
S0733Solanum lycopersicumIL8-3seedlings, two-week-old 161122.14
S0732Solanum lycopersicumIL8-2-1seedlings, two-week-old 184131.09
S0731Solanum lycopersicumIL8-2seedlings, two-week-old 200147.3
S0730Solanum lycopersicumIL8-1-3seedlings, two-week-old 363226.66
S0729Solanum lycopersicumIL8-1Dseedlings, two-week-old 219139.51
S0728Solanum lycopersicumIL8-1-1seedlings, two-week-old 221145.65
S0727Solanum lycopersicumIL2-5seedlings, two-week-old 270165.06
S0726Solanum lycopersicumIL1-1seedlings, two-week-old 249149.05
S0725Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate3479467.36
S0724Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate2453264.45
S0723Solanum lycopersicum x S. pennelliiM82 x LA716 (F2)seedlings, two-week-old , replicate1415407.09
S0722Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate2758536.08
S0721Solanum lycopersicum x S. pennelliiM82 x LA716 (F1)seedlings, two-week-old , replicate1363395.16
S0720Solanum pennelliiLA716seedlings, two-week-old , replicate21022976.48
S0719Solanum pennelliiLA716seedlings, two-week-old , replicate14991441.48
S0718Solanum lycopersicumM82seedlings, two-week-old , replicate2214149.08
S0717Solanum lycopersicumM82seedlings, two-week-old , replicate1297396.33
S0716Solanum lycopersicumMicroTom fruit , 7 days post breaker3213.38
S0715Solanum lycopersicumMicroTom fruit , 5 days post breaker1616.36
S0714Solanum lycopersicumMicroTom fruit , 3 days post breaker5814.6
S0713Solanum lycopersicumMicroTom fruit , breaker stage9226.07
S0712Solanum lycopersicumMicroTom fruit , mature green10125.84
S0711Solanum lycopersicumMicroTom fruit , 11mm to 14mm in diameter2913.97
S0710Solanum lycopersicumMicroTom fruit , 5mm to 7mm in diameter108.31
S0709Solanum lycopersicumMicroTom fruit , 1mm to 3mm in diameter4525.52
S0708Solanum lycopersicumMicroTom flower, open13842.58
S0707Solanum lycopersicumMicroTom flower bud, closed bud before flower blooming20854.61
S0372Solanum lycopersicumHeinz 1706flower10.3
S0371Solanum lycopersicumHeinz 1706leaf10.3

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00199

genome hit of precursorprecursor
sequence IDstartendstrandsequence folding
energy		miRNA*structure
SL2.40ch045660439656604573+ AGCUGACGGCGUUAGAUUGA
UAUACAUUACUCACAAUAAC
GAUUUACUCCUAACACGUUA
CUCACAGUAAUGUUUUAGGA
GUAAAACGUUACUCAAACUA
AAGUUUUAGUACUCGAAAUA
ACGUUUUAAGAGUACAACUU
UUCUCACGGUAACAUAUAUC
AACCUAACACUGUUAGUU		-63.96NA structure
SL2.40ch023857690938576782- AGCUGACGGCGUUAGAUUGA
UAUACGCUAUUCACAGUAAC
GUUUUAGGAGUAAAACGUUA
UUCAAAAAUAACGUUUUAGG
AGUAAAGCGUUACUUACGGU
AACAUAUACUAACCUAACGU
UGUUAGUU		-46.10NA structure
SL2.40ch0443775864377429- AGCUGACGGCGUUAGAUUGA
UAUACAUUACUCAUAGUAAC
GUUUUACUCCUAAAACGUUA
AUGUGAGUAACGUCUUACUC
UUAAAACGUUACUUACAAUA
ACGUUUUAGGAGUAAAAUGU
UACUCACAGUAACGUAUAUC
AACCUAACACUGUUAAUU		-82.50NA structure