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Tomato miRNA M00200
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGUUGACGGCGUUAGAUUGAUAUA | 24 | NA | S08637554 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 1 | 0.13 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 2 | 0.23 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 3 | 0.65 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 9 | 0.66 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 801 | 617.26 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 677 | 513.58 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 775 | 552.14 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 990 | 729.11 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 1285 | 802.36 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 770 | 490.52 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 784 | 516.7 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 1109 | 677.98 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 901 | 539.35 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 274 | 267.34 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 475 | 277.29 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 199 | 195.21 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 465 | 328.86 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 632 | 688 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 1250 | 1194.32 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 865 | 2498.75 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 888 | 618.62 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 1160 | 1547.94 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 296 | 123.78 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 96 | 98.16 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 322 | 81.05 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 433 | 122.72 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 383 | 97.99 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 115 | 55.4 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 72 | 59.81 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 162 | 91.85 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 526 | 162.29 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 898 | 235.75 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 4 | 1.21 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 4 | 1.21 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00200
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch10 | 43631704 | 43631861 | + | AGUUGACGGCGUUAGAUUGA UAUAAGUUACUCACAAUAAU GUUUUACUCCUAAAACGUUA GUCACAGUAACGUUUUAAGA GUAAAAUAUUACUCAAAAUA ACGUUUUAGGAGUAAAAUGU UACUUACAGUAACGUAUAUU AACCUAACGCUGUUAAUU | -69.40 | NA | structure |
| SL2.40ch02 | 42047750 | 42047845 | + | AGUUGACGGCGUUAGAUUGA UAUACGUUACUCAAAAUGAC UUUUUAGAAGUAAAGCGUUA CUUACAGUUACGUAUAUCAA CCUAACGCUAUUAAUU | -34.10 | NA | structure |
| SL2.40ch08 | 1499357 | 1499485 | + | AGUUGACGGCGUUAGAUUGA UAUAUGUUACUCAUAGUAAC AUUUUACUCCUAACACGUUA CUCAAAAUAACGUUUUAGGA AUAAAAUAUUACUCACAGUA ACGUAUAUCAACCUAACGCU GUUAGUUUU | -58.10 | NA | structure |
| SL2.40ch02 | 29507559 | 29507433 | - | AGUUGACGGCGUUAGAUUGA UAUACGUUACUCACAGUAAC GUUUUACUCGUGAAACGUUA UUGUGAGUAACGUCUUACUC UUAAAACGUUACUCAGAGUA ACGUAUAUCAACCUAACGCU GUUAGUU | -69.30 | NA | structure |
